Anika Oellrich: search on Z-Library

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1

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

Collier, Nigel, Groza, Tudor, Smedley, Damian, Robinson, Peter N., Oellrich, Anika, Rebholz-Schuhmann, Dietrich

Journal:

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

2

Text-mining solutions for biomedical research: enabling integrative biology

Rebholz-Schuhmann, Dietrich, Oellrich, Anika, Hoehndorf, Robert

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

3

Characterisation of mental health conditions in social media using Informed Deep Learning

Gkotsis, George, Oellrich, Anika, Velupillai, Sumithra, Liakata, Maria, Hubbard, Tim J. P., Dobson, Richard J. B., Dutta, Rina

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 556 KB

english, 2017

4

Use of animal models for exome prioritization of rare disease genes

Smedley, Damian, Kohler, Sebastian, Bone, William, Oellrich, Anika, Jacobsen, Jules, Wang, Kai, Mungall, Chris, Washington, Nicole, Bauer, Sebastian, Seelow, Dominic, Krawitz, Peter, Boerkel, Corneliu

Journal:

Orphanet Journal of Rare Diseases

Year:

2014

Language:

english

File:

PDF, 285 KB

english, 2014

5

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

Karin Verspoor,Anika Oellrich,Nigel Collier…

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 360 KB

english, 2016

6

Toward knowledge support for analysis and interpretation of complex traits

Nigel Collier,Anika Oellrich,Tudor Groza

Journal:

Year:

2013

Language:

english

File:

PDF, 252 KB

english, 2013

7

Tools for exploring mouse models of human disease

Haendel, Melissa, Papatheodorou, Irene, Oellrich, Anika, Mungall, Christopher J., Washington, Nicole, Lewis, Suzanna E., Robinson, Peter N., Smedley, Damian

Journal:

Drug Discovery Today: Disease Models

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

8

Automated PDF highlighting to support faster curation of literature for Parkinson’s and Alzheimer’s disease

Wu, Honghan, Oellrich, Anika, Girges, Christine, de Bono, Bernard, Hubbard, Tim J.P., Dobson, Richard J.B.

Journal:

Year:

2017

Language:

english

File:

PDF, 978 KB

english, 2017

9

The influence of disease categories on gene candidate predictions from model organism phenotypes

Oellrich, Anika, Koehler, Sebastian, Washington, Nicole, Mungall, Chris, Lewis, Suzanna, Haendel, Melissa, Robinson, Peter N, Smedley, Damian

Journal:

Journal of Biomedical Semantics

Year:

2014

Language:

english

File:

PDF, 329 KB

english, 2014

10

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Hoehndorf, Robert, Dumontier, Michel, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, Schofield, Paul N., Gkoutos, Georgios V., Androulakis, Ioannis P.

Journal:

Year:

2011

Language:

english

File:

PDF, 387 KB

english, 2011

11

Special issue on bio-ontologies and phenotypes

Soldatova, Larisa N., Collier, Nigel, Oellrich, Anika, Groza, Tudor, Verspoor, Karin, Rocca-Serra, Philippe, Dumontier, Michel, Shah, Nigam H.

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 376 KB

english, 2015

12

[IEEE 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shanghai, China (2013.12.18-2013.12.21)] 2013 IEEE International Conference on Bioinformatics and Biomedicine - Using silver and semi-gold standard corpora to compare open named entity recognisers

Groza, Tudor, Oellrich, Anika, Collier, Nigel

Year:

2013

Language:

english

File:

PDF, 603 KB

english, 2013

13

Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning

Gkotsis, George, Oellrich, Anika, Velupillai, Sumithra, Liakata, Maria, Hubbard, Tim J. P., Dobson, Richard J. B., Dutta, Rina

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 107 KB

english, 2017

14

Ontology design patterns to disambiguate relations between genes and gene products in GENIA

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 460 KB

english, 2011

15

Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases

Oellrich, Anika, Hoehndorf, Robert, Gkoutos, Georgios V., Rebholz-Schuhmann, Dietrich, Schuelke, Markus

Journal:

Year:

2012

Language:

english

File:

PDF, 2.10 MB

english, 2012

16

Learning to Recognize Phenotype Candidates in the Auto-Immune Literature Using SVM Re-Ranking

Collier, Nigel, Tran, Mai-vu, Le, Hoang-quynh, Ha, Quang-Thuy, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, Rocha, Luis M.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

17

Generation of Silver Standard Concept Annotations from Biomedical Texts with Special Relevance to Phenotypes

Oellrich, Anika, Collier, Nigel, Smedley, Damian, Groza, Tudor, Rahman, M. Sohel

Journal:

Year:

2015

Language:

english

File:

PDF, 1.70 MB

english, 2015

18

An ontology approach to comparative phenomics in plants

Oellrich, Anika, Walls, Ramona L, Cannon, Ethalinda, Cannon, Steven B, Cooper, Laurel, Gardiner, Jack, Gkoutos, Georgios V, Harper, Lisa, He, Mingze, Hoehndorf, Robert, Jaiswal, Pankaj, Kalberer, Scot

Journal:

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

19

Reporting phenotypes in mouse models when considering body size as a potential confounder

Oellrich, Anika, Meehan, Terrence F., Parkinson, Helen, Sarntivijai, Sirarat, White, Jacqueline K., Karp, Natasha A.

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 1.97 MB

english, 2016

20

[World Scientific Publishing Co. Pte. Ltd. Biocomputing 2012 - The Pacific Symposium - Kohala Coast, Hawaii, USA (2012.01.03-2012.01.07)] Biocomputing 2012 - Proceedings of the Pacific Symposium - LINKING PHARMGKB TO PHENOTYPE STUDIES AND ANIMAL MODELS OF DISEASE FOR DRUG REPURPOSING

HOEHNDORF, ROBERT, OELLRICH, ANIKA, REBHOLZ-SCHUHMANN, DIETRICH, SCHOFIELD, PAUL N., GKOUTOS, GEORGIOS V.

Year:

2012

Language:

english

File:

PDF, 1.41 MB

english, 2012

21

The digital revolution in phenotyping

Oellrich, Anika, Collier, Nigel, Groza, Tudor, Rebholz-Schuhmann, Dietrich, Shah, Nigam, Bodenreider, Olivier, Boland, Mary Regina, Georgiev, Ivo, Liu, Hongfang, Livingston, Kevin, Luna, Augustin, Mal

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 692 KB

english, 2016

22

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

Anika Oellrich, Georgios V Gkoutos, Robert Hoehndorf…

Journal:

Journal of Biomedical Semantics

Year:

2012

Language:

english

File:

PDF, 223 KB

english, 2012

23

Disease insights through cross-species phenotype comparisons

Haendel, Melissa A., Vasilevsky, Nicole, Brush, Matthew, Hochheiser, Harry S., Jacobsen, Julius, Oellrich, Anika, Mungall, Christopher J., Washington, Nicole, Köhler, Sebastian, Lewis, Suzanna E., Rob

Journal:

Mammalian Genome

Year:

2015

Language:

english

File:

PDF, 972 KB

english, 2015

24

Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP

Anika Oellrich,Christoph Grabmüller…

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 578 KB

english, 2013

25

Relations as patterns: bridging the gap between OBO and OWL

Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 244 KB

english, 2010

26

Linking gene expression to phenotypes via pathway information

Papatheodorou, Irene, Oellrich, Anika, Smedley, Damian

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

27

Concept selection for phenotypes and diseases using learn to rank

Collier, Nigel, Oellrich, Anika, Groza, Tudor

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 463 KB

english, 2015

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